3PY5 image
Deposition Date 2010-12-11
Release Date 2010-12-29
Last Version Date 2023-09-13
Entry Detail
PDB ID:
3PY5
Keywords:
Title:
Crystal structure of a beta-lactamase-like protein from brucella melitensis bound to AMP
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-lactamase-like
Gene (Uniprot):BAB1_1016
Chain IDs:A
Chain Length:274
Number of Molecules:1
Biological Source:Brucella melitensis biovar Abortus
Primary Citation
BrabA.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a `putative beta-lactamase-like protein from Brucella melitensis.
Acta Crystallogr.,Sect.F 67 1106 1112 (2011)
PMID: 21904058 DOI: 10.1107/S1744309111010220

Abstact

The crystal structure of a β-lactamase-like protein from Brucella melitensis was initially solved by SAD phasing from an in-house data set collected on a crystal soaked with iodide. A high-resolution data set was collected at a synchroton at the Se edge wavelength, which also provided an independent source of phasing using a small anomalous signal from metal ions in the active site. Comparisons of anomalous peak heights at various wavelengths allowed the identification of the active-site metal ions as manganese. In the native data set a partially occupied GMP could be identified. When co-crystallized with AMPPNP or GMPPNP, clear density for the hydrolyzed analogs was observed, providing hints to the function of the protein.

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Primary Citation of related structures