3PPV image
Deposition Date 2010-11-25
Release Date 2011-05-04
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3PPV
Keywords:
Title:
Crystal structure of an engineered VWF A2 domain (N1493C and C1670S)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 65
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:von Willebrand factor
Gene (Uniprot):VWF
Mutagens:N1493C, C1670S
Chain IDs:A
Chain Length:196
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
A novel calcium-binding site of von Willebrand factor A2 domain regulates its cleavage by ADAMTS13
Blood 117 4623 4631 (2011)
PMID: 21385852 DOI: 10.1182/blood-2010-11-321596

Abstact

The proteolysis of VWF by ADAMTS13 is an essential step in the regulation of its hemostatic and thrombogenic potential. The cleavage occurs at strand β4 in the structural core of the A2 domain of VWF, so unfolding of the A2 domain is a prerequisite for cleavage. In the present study, we present the crystal structure of an engineered A2 domain that exhibits a significant difference in the α3-β4 loop compared with the previously reported structure of wild-type A2. Intriguingly, a metal ion was detected at a site formed mainly by the C-terminal region of the α3-β4 loop that was later identified as Ca(²+) after various biophysical and biochemical studies. Force-probe molecular dynamic simulations of a modeled structure of the wild-type A2 featuring the discovered Ca(²+)-binding site revealed that an increase in force was needed to unfold strand β4 when Ca(²+) was bound. Cleavage assays consistently demonstrated that Ca(²+) binding stabilized the A2 domain and impeded its unfolding, and consequently protected it from cleavage by ADAMTS13. We have revealed a novel Ca(²+)-binding site at the A2 domain of VWF and demonstrated a relationship between Ca(²+) and force in the regulation of VWF and primary hemostasis.

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