3PLF image
Deposition Date 2010-11-15
Release Date 2010-12-01
Last Version Date 2024-10-16
Entry Detail
PDB ID:
3PLF
Title:
Reverse Binding Mode of MetRD peptide complexed with c-Cbl TKB domain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
(Taxon ID: )
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.92 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:MetRD peptide
Chain IDs:A, C
Chain Length:11
Number of Molecules:2
Biological Source:
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase CBL
Gene (Uniprot):CBL
Chain IDs:B, D
Chain Length:329
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PTR A TYR O-PHOSPHOTYROSINE
Primary Citation
An adjacent arginine, and the phosphorylated tyrosine in the c-Met receptor target sequence, dictates the orientation of c-Cbl binding
Febs Lett. 585 281 285 (2011)
PMID: 21163258 DOI: 10.1016/j.febslet.2010.11.060

Abstact

Previously, we have demonstrated that the tyrosine phosphorylated hepatocyte growth factor receptor (Met) binds to the c-Cbl phosphotyrosine-recognition, tyrosine kinase binding (TKB) domain in a reverse orientation compared to other c-Cbl binding partners. A Met peptide with the DpYR motif changed to RpYD (MetRD) retains a similar TKB binding affinity as the native Met peptide. However, the TKB: MetRD complex crystal structure reveals a complete reversal of the binding orientation. Collated data indicates that both binding and orientation is dictated by the phosphorylated tyrosine and an adjacent arginine forming intra-peptide hydrogen bonds and aligning unidirectionally with complementary charges in the phosphotyrosine binding pocket of c-Cbl.

Legend

Protein

Chemical

Disease

Primary Citation of related structures