3PKZ image
Deposition Date 2010-11-12
Release Date 2011-06-15
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3PKZ
Keywords:
Title:
Structural basis for catalytic activation of a serine recombinase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 65
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Recombinase Sin
Mutagens:R54E, Q115R
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:124
Number of Molecules:12
Biological Source:Staphylococcus aureus
Primary Citation
Structural basis for catalytic activation of a serine recombinase.
Structure 19 799 809 (2011)
PMID: 21645851 DOI: 10.1016/j.str.2011.03.017

Abstact

Sin resolvase is a site-specific serine recombinase that is normally controlled by a complex regulatory mechanism. A single mutation, Q115R, allows the enzyme to bypass the entire regulatory apparatus, such that no accessory proteins or DNA sites are required. Here, we present a 1.86 Å crystal structure of the Sin Q115R catalytic domain, in a tetrameric arrangement stabilized by an interaction between Arg115 residues on neighboring subunits. The subunits have undergone significant conformational changes from the inactive dimeric state previously reported. The structure provides a new high-resolution view of a serine recombinase active site that is apparently fully assembled, suggesting roles for the conserved active site residues. The structure also suggests how the dimer-tetramer transition is coupled to assembly of the active site. The tetramer is captured in a different rotational substate than that seen in previous hyperactive serine recombinase structures, and unbroken crossover site DNA can be readily modeled into its active sites.

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