3PEL image
Deposition Date 2010-10-26
Release Date 2010-11-03
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3PEL
Title:
Structure of Greyhound Hemoglobin: Origin of High Oxygen Affinity
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemoglobin subunit alpha
Gene (Uniprot):HBA
Chain IDs:A
Chain Length:141
Number of Molecules:1
Biological Source:Canis lupus familiaris
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemoglobin subunit beta
Gene (Uniprot):HBB
Chain IDs:B
Chain Length:146
Number of Molecules:1
Biological Source:Canis lupus familiaris
Ligand Molecules
Primary Citation
Structure of Greyhound hemoglobin: origin of high oxygen affinity.
Acta Crystallogr.,Sect.D 67 395 402 (2011)
PMID: 21543841 DOI: 10.1107/S0907444911006044

Abstact

This study presents the crystal structure of Greyhound hemoglobin (GrHb) determined to 1.9 Å resolution. GrHb was found to crystallize with an α₁β₁ dimer in the asymmetric unit and belongs to the R2 state. Oxygen-affinity measurements combined with the fact that GrHb crystallizes in the R2 state despite the high-salt conditions used for crystallization strongly indicate that GrHb can serve as a model high-oxygen-affinity hemoglobin (Hb) for higher mammals, especially humans. Structural analysis of GrHb and its comparison with the R2-state of human Hb revealed several regions that can potentially contribute to the high oxygen affinity of GrHb and serve to rationalize the additional stability of the R2-state of GrHb. A previously well studied hydrophobic cluster of bar-headed goose Hb near α119 was also incorporated in the comparison between GrHb and human Hb. Finally, a structural comparison with generic dog Hb and maned wolf Hb was conducted, revealing that in contrast to GrHb these structures belong to the R state of Hb and raising the intriguing possibility of an additional allosteric factor co-purifying with GrHb that can modulate its quaternary structure.

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