3PEG image
Deposition Date 2010-10-26
Release Date 2010-12-08
Last Version Date 2024-11-06
Entry Detail
PDB ID:
3PEG
Title:
Crystal structure of Neurofibromins Sec14-PH module containing a patient derived duplication (TD)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.52 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 64 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Neurofibromin
Gene (Uniprot):NF1
Mutations:insertion mutant
Chain IDs:A
Chain Length:290
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural and biochemical consequences of NF1 associated nontruncating mutations in the Sec14-PH module of neurofibromin.
Hum.Mutat. 32 191 197 (2011)
PMID: 21089070 DOI: 10.1002/humu.21405

Abstact

Neurofibromatosis type 1 (NF1) is a common genetic disorder caused by alterations in the tumor suppressor gene NF1. Clinical manifestations include various neural crest derived tumors, pigmentation anomalies, bone deformations, and learning disabilities. NF1 encodes the Ras specific GTPase activating protein (RasGAP) neurofibromin, of which the central RasGAP related domain as well as a Sec14-like (residues 1560-1699) and a tightly interacting pleckstrin homology (PH)-like (1713-1818) domain are currently well defined. However, patient-derived nontruncating mutations have been reported along the whole NF1 gene, suggesting further essential protein functions. Focusing on the Sec14-PH module, we have engineered such nontruncating mutations and analyzed their implications on protein function and structure using lipid binding assays, CD spectroscopy and X-ray crystallography. Although lipid binding appears to be preserved among most nontruncating mutants, we see major structural changes for two of the alterations. Judging from these changes and our biochemical data, we suggest the presence of an intermolecular contact surface in the lid-lock region of the protein.

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