3PBJ image
Deposition Date 2010-10-20
Release Date 2011-11-30
Last Version Date 2022-05-04
Entry Detail
PDB ID:
3PBJ
Keywords:
Title:
Hydrolytic catalysis and structural stabilization in a designed metalloprotein
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:COIL SER L9L-Pen L23H
Chain IDs:A, B, C, D, E, F
Chain Length:31
Number of Molecules:6
Biological Source:artificial gene
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
LE1 A VAL 3-SULFANYL-L-VALINE
Primary Citation
Hydrolytic catalysis and structural stabilization in a designed metalloprotein.
Nat Chem 4 118 123 (2012)
PMID: 22270627 DOI: 10.1038/nchem.1201

Abstact

Metal ions are an important part of many natural proteins, providing structural, catalytic and electron transfer functions. Reproducing these functions in a designed protein is the ultimate challenge to our understanding of them. Here, we present an artificial metallohydrolase, which has been shown by X-ray crystallography to contain two different metal ions-a Zn(II) ion, which is important for catalytic activity, and a Hg(II) ion, which provides structural stability. This metallohydrolase displays catalytic activity that compares well with several characteristic reactions of natural enzymes. It catalyses p-nitrophenyl acetate (pNPA) hydrolysis with an efficiency only ~100-fold less than that of human carbonic anhydrase (CA)II and at least 550-fold better than comparable synthetic complexes. Similarly, CO(2) hydration occurs with an efficiency within ~500-fold of CAII. Although histidine residues in the absence of Zn(II) exhibit pNPA hydrolysis, miniscule apopeptide activity is observed for CO(2) hydration. The kinetic and structural analysis of this first de novo designed hydrolytic metalloenzyme reveals necessary design features for future metalloenzymes containing one or more metals.

Legend

Protein

Chemical

Disease

Primary Citation of related structures