3PAW image
Deposition Date 2010-10-19
Release Date 2011-02-23
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3PAW
Keywords:
Title:
Low resolution X-ray crystal structure of Yeast Rnr1p with dATP bound in the A-site
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
6.61 Å
R-Value Free:
0.44
R-Value Work:
0.39
R-Value Observed:
0.39
Space Group:
P 63
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribonucleoside-diphosphate reductase large chain 1
Gene (Uniprot):RNR1
Chain IDs:A, B, C, D
Chain Length:888
Number of Molecules:4
Biological Source:Saccharomyces cerevisiae
Ligand Molecules
Primary Citation
Structural basis for allosteric regulation of human ribonucleotide reductase by nucleotide-induced oligomerization.
Nat.Struct.Mol.Biol. 18 316 322 (2011)
PMID: 21336276 DOI: 10.1038/nsmb.2007

Abstact

Ribonucleotide reductase (RR) is an α(n)β(n) (RR1-RR2) complex that maintains balanced dNTP pools by reducing NDPs to dNDPs. RR1 is the catalytic subunit, and RR2 houses the free radical required for catalysis. RR is allosterically regulated by its activator ATP and its inhibitor dATP, which regulate RR activity by inducing oligomerization of RR1. Here, we report the first X-ray structures of human RR1 bound to TTP alone, dATP alone, TTP-GDP, TTP-ATP, and TTP-dATP. These structures provide insights into regulation of RR by ATP or dATP. At physiological dATP concentrations, RR1 forms inactive hexamers. We determined the first X-ray structure of the RR1-dATP hexamer and used single-particle electron microscopy to visualize the α(6)-ββ'-dATP holocomplex. Site-directed mutagenesis and functional assays confirm that hexamerization is a prerequisite for inhibition by dATP. Our data indicate a mechanism for regulating RR activity by dATP-induced oligomerization.

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Primary Citation of related structures
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