3P72 image
Deposition Date 2010-10-12
Release Date 2010-11-24
Last Version Date 2024-10-30
Entry Detail
PDB ID:
3P72
Title:
structure of platelet Glycoprotein 1b alpha with a bound peptide inhibitor
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
(Taxon ID: )
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.28
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Platelet glycoprotein Ib alpha chain
Gene (Uniprot):GP1BA
Chain IDs:A
Chain Length:269
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:OS1 peptide
Chain IDs:B
Chain Length:11
Number of Molecules:1
Biological Source:
Ligand Molecules
Peptide-like Molecules
PRD_000829
Primary Citation
Glycoprotein Ibalpha inhibitor complex structure reveals a combined steric and allosteric mechanism of von Willebrand factor antagonism.
Blood 114 4883 4885 (2009)
PMID: 19726719 DOI: 10.1182/blood-2009-05-224170

Abstact

Platelet glycoprotein Ibalpha (GpIbalpha) interactions with von Willebrand factor (VWF) are a critical early event in platelet adhesion, which contributes to hemostasis and thrombosis. Here we report the structure of a complex between GpIbalpha and a potent peptide inhibitor. The cyclic peptide (CTERMALHNLC) was isolated from a cysteine-constrained phage display library, and in the complex this forms one and a half turns of an amphipathic alpha-helix, the curvature of which facilitates contacts with the curved concave face of the GpIbalpha leucine-rich repeats. The peptide has only limited overlap with the VWF binding site. It effectively inhibits by stabilizing an alternative alpha-helical conformation of a regulatory loop that forms an extended beta-hairpin upon VWF binding. The structure defines a previously unrecognized binding site within GpIbalpha and represents a clear strategy for developing antiplatelet agents targeting the GpIbalpha-VWF interaction allosterically.

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