ISDA: 3OVZ

Deposition Date 2010-09-17

Release Date 2010-12-22

Last Version Date 2024-10-16

Entry Detail

PDB ID:

3OVZ

Keywords:

HYDROLASE/HYDROLASE INHIBITOR

Title:

Cathepsin K in complex with a covalent inhibitor with a ketoamide warhead

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.02 Å

R-Value Free:

0.30

R-Value Work:

0.24

R-Value Observed:

0.24

Space Group:

P 43 21 2

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cathepsin K
Gene (Uniprot):CTSK
Chain IDs:A
Chain Length:213
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P43235 Pfam ID:PF00112 EC:3.4.22.38

Ligand Molecules

O96

SO4

Primary Citation

Trifluoromethylphenyl as P2 for ketoamide-based cathepsin S inhibitors.

Cai, J, Robinson, J, Belshaw, S, Everett, K, Fradera, X, van Zeeland, M, van Berkom, L, van Rijnsbergen, P, Popplestone, L, Baugh, M, Dempster, M, Bruin, J, Hamilton, W, Kinghorn, E, Westwood, P, Kerr, J, Rankovic, Z, Arbuckle, W, Bennett, D.J, Jones, P.S, Long, C, Martin, I, Uitdehaag, J.C, Meulemans, T.Show

Bioorg.Med.Chem.Lett. 20 6890 6894 (2010)

PMID: 21030256 DOI: 10.1016/j.bmcl.2010.10.012

Abstact

The trifluoromethylphenyl P2 motif from previously reported heteroarylnitrile series has been successfully applied for the design and synthesis of highly potent novel ketoamide-based cathepsin S inhibitors. The key in this process is the change of the torsion angle between the P2 phenyl ring and the attached secondary amide by adding a small Cl, F, or Me group at the 2-position.

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Primary Citation of related structures