3ORM image
Entry Detail
PDB ID:
3ORM
Keywords:
Title:
Mycobacterium tuberculosis PknB kinase domain D76A mutant
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2010-09-07
Release Date:
2010-12-15
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.28
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Serine/threonine protein kinase
Mutations:D76A
Chain IDs:A
Chain Length:311
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Primary Citation
Allosteric activation mechanism of the Mycobacterium tuberculosis receptor Ser/Thr protein kinase, PknB.
Structure 18 1667 1677 (2010)
PMID: 21134645 DOI: 10.1016/j.str.2010.09.019

Abstact

The essential Mycobacterium tuberculosis Ser/Thr protein kinase (STPK), PknB, plays a key role in regulating growth and division, but the structural basis of activation has not been defined. Here, we provide biochemical and structural evidence that dimerization through the kinase-domain (KD) N-lobe activates PknB by an allosteric mechanism. Promoting KD pairing using a small-molecule dimerizer stimulates the unphosphorylated kinase, and substitutions that disrupt N-lobe pairing decrease phosphorylation activity in vitro and in vivo. Multiple crystal structures of two monomeric PknB KD mutants in complex with nucleotide reveal diverse inactive conformations that contain large active-site distortions that propagate > 30 Å from the mutation site. These results define flexible, inactive structures of a monomeric bacterial receptor KD and show how "back-to-back" N-lobe dimerization stabilizes the active KD conformation. This general mechanism of bacterial receptor STPK activation affords insights into the regulation of homologous eukaryotic kinases that form structurally similar dimers.

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