3OHB image
Deposition Date 2010-08-17
Release Date 2010-12-22
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3OHB
Keywords:
Title:
Yeast DNA polymerase eta extending from an 8-oxoG lesion
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DNA polymerase eta
Gene (Uniprot):RAD30
Mutations:K140A, S144W
Chain IDs:A
Chain Length:520
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Primary Citation
Structural basis for error-free replication of oxidatively damaged DNA by yeast DNA polymerase eta.
Structure 18 1463 1470 (2010)
PMID: 21070945 DOI: 10.1016/j.str.2010.08.019

Abstact

7,8-dihydro-8-oxoguanine (8-oxoG) adducts are formed frequently by the attack of oxygen-free radicals on DNA. They are among the most mutagenic lesions in cells because of their dual coding potential, where, in addition to normal base-pairing of 8-oxoG(anti) with dCTP, 8-oxoG in the syn conformation can base pair with dATP, causing G to T transversions. We provide here for the first time a structural basis for the error-free replication of 8-oxoG lesions by yeast DNA polymerase η (Polη). We show that the open active site cleft of Polη can accommodate an 8-oxoG lesion in the anti conformation with only minimal changes to the polymerase and the bound DNA: at both the insertion and post-insertion steps of lesion bypass. Importantly, the active site geometry remains the same as in the undamaged complex and provides a basis for the ability of Polη to prevent the mutagenic replication of 8-oxoG lesions in cells.

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