3ODU image
Entry Detail
PDB ID:
3ODU
Title:
The 2.5 A structure of the CXCR4 chemokine receptor in complex with small molecule antagonist IT1t
Biological Source:
PDB Version:
Deposition Date:
2010-08-11
Release Date:
2010-10-27
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:C-X-C chemokine receptor type 4, Lysozyme Chimera
Mutations:L125W, C1054T, C1097T
Chain IDs:A, B
Chain Length:502
Number of Molecules:2
Biological Source:Homo Sapiens, Enterobacteria phage T4
Primary Citation
Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists.
Science 330 1066 1071 (2010)
PMID: 20929726 DOI: 10.1126/science.1194396

Abstact

Chemokine receptors are critical regulators of cell migration in the context of immune surveillance, inflammation, and development. The G protein-coupled chemokine receptor CXCR4 is specifically implicated in cancer metastasis and HIV-1 infection. Here we report five independent crystal structures of CXCR4 bound to an antagonist small molecule IT1t and a cyclic peptide CVX15 at 2.5 to 3.2 angstrom resolution. All structures reveal a consistent homodimer with an interface including helices V and VI that may be involved in regulating signaling. The location and shape of the ligand-binding sites differ from other G protein-coupled receptors and are closer to the extracellular surface. These structures provide new clues about the interactions between CXCR4 and its natural ligand CXCL12, and with the HIV-1 glycoprotein gp120.

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