3ODI image
Deposition Date 2010-08-11
Release Date 2011-02-16
Last Version Date 2023-12-06
Entry Detail
PDB ID:
3ODI
Title:
Crystal structure of cyclophilin A in complex with Voclosporin E-ISA247
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.21
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cyclophilin A
Chain IDs:A, C, E, G, I, K, M, O, Q, S
Chain Length:165
Number of Molecules:10
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Voclosporin
Chain IDs:B, D, F, H, J, L, N, P, R, T
Chain Length:11
Number of Molecules:10
Biological Source:Tolypocladium inflatum
Primary Citation
Structural basis for the cyclophilin A binding affinity and immunosuppressive potency of E-ISA247 (voclosporin).
Acta Crystallogr.,Sect.D 67 119 123 (2011)
PMID: 21245533 DOI: 10.1107/S0907444910051905

Abstact

E-ISA247 (voclosporin) is a cyclosporin A analogue that is in late-stage clinical development for the treatment of autoimmune diseases and the prevention of organ graft rejection. The X-ray crystal structures of E-ISA247 and its stereoisomer Z-ISA247 bound to cyclophilin A have been determined and their binding affinities were measured to be 15 and 61 nM, respectively, by fluorescence spectroscopy. The higher affinity of E-ISA247 can be explained by superior van der Waals contacts between its unique side chain and cyclophilin A. Comparison with the known ternary structure including calcineurin suggests that the higher immunosuppressive efficacy of E-ISA247 relative to cyclosporin A could be a consequence of structural changes in calcineurin induced by the modified E-ISA247 side chain.

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Primary Citation of related structures