3OA5 image
Deposition Date 2010-08-04
Release Date 2011-08-10
Last Version Date 2023-11-01
Entry Detail
PDB ID:
3OA5
Keywords:
Title:
The structure of chi1, a chitinase from Yersinia entomophaga
Biological Source:
Source Organism(s):
Yersinia (Taxon ID: 373547)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.74 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chi1
Gene (Uniprot):chi1
Chain IDs:A, B
Chain Length:574
Number of Molecules:2
Biological Source:Yersinia
Primary Citation
Structural analysis of Chi1 Chitinase from Yen-Tc: the multisubunit insecticidal ABC toxin complex of Yersinia entomophaga
J.Mol.Biol. 415 359 371 (2012)
PMID: 22108167 DOI: 10.1016/j.jmb.2011.11.018

Abstact

Yersinia entomophaga MH96 is a native New Zealand soil bacterium that secretes a large ABC-type protein toxin complex, Yen-Tc, similar to those produced by nematode-associated bacteria such as Photorhabdus luminescens. Y. entomophaga displays an exceptionally virulent pathogenic phenotype in sensitive insect species, causing death within 72 h of infection. Because of this phenotype, there is intrinsic interest in the mechanism of action of Yen-Tc, and it also has the potential to function as a novel class of biopesticide. We have identified genes that encode chitinases as part of the toxin complex loci in Y. entomophaga MH96, P. luminescens, Photorhabdus asymbiotica and Xenorhabdus nematophila. Furthermore, we have shown that the secreted toxin complex from Y. entomophaga MH96 includes two chitinases as an integral part of the complex, a feature not described previously in other ABC toxins and possibly related to the severe disease caused by this bacterium. We present here the structure of the Y. entomophaga MH96 Chi1 chitinase, determined by X-ray crystallography to 1.74 Å resolution, and show that a ring of five symmetrically arranged lobes on the surface of the Yen-Tc toxin complex structure, as determined by single-particle electron microscopy, provides a good fit to the Chi1 monomer. We also confirm that the isolated chitinases display endochitinase activity, as does the complete toxin complex.

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Primary Citation of related structures
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