3O59 image
Entry Detail
PDB ID:
3O59
Keywords:
Title:
DNA polymerase D large subunit DP2(1-300) from Pyrococcus horikoshii
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2010-07-28
Release Date:
2011-01-05
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.27
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:DNA polymerase II large subunit
Chain IDs:A (auth: X)
Chain Length:300
Number of Molecules:1
Biological Source:Pyrococcus horikoshii
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
Novel structure of an N-terminal domain that is crucial for the dimeric assembly and DNA-binding of an archaeal DNA polymerase D large subunit from Pyrococcus horikoshii
Febs Lett. 585 452 458 (2011)
PMID: 21192935 DOI: 10.1016/j.febslet.2010.12.040

Abstact

Archaea-specific D-family DNA polymerase forms a heterotetramer consisting of two large polymerase subunits and two small exonuclease subunits. The N-terminal (1-300) domain structure of the large subunit was determined by X-ray crystallography, although ∼50 N-terminal residues were disordered. The determined structure consists of nine alpha helices and three beta strands. We also identified the DNA-binding ability of the domain by SPR measurement. The N-terminal (1-100) region plays crucial roles in the folding of the large subunit dimer by connecting the ∼50 N-terminal residues with their own catalytic region (792-1163).

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Primary Citation of related structures