3O2D image
Entry Detail
PDB ID:
3O2D
Keywords:
Title:
Crystal structure of HIV-1 primary receptor CD4 in complex with a potent antiviral antibody
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2010-07-22
Release Date:
2010-12-22
Method Details:
Experimental Method:
Resolution:
2.19 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:T-cell surface glycoprotein CD4
Chain IDs:C (auth: A)
Chain Length:188
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:ibalizumab heavy chain
Chain IDs:B (auth: H)
Chain Length:225
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:ibalizumab light chain
Chain IDs:A (auth: L)
Chain Length:219
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
Crystal Structure of HIV-1 Primary Receptor CD4 in Complex with a Potent Antiviral Antibody.
Structure 18 1632 1641 (2010)
PMID: 21134642 DOI: 10.1016/j.str.2010.09.017

Abstact

Ibalizumab is a humanized, anti-CD4 monoclonal antibody. It potently blocks HIV-1 infection and targets an epitope in the second domain of CD4 without interfering with immune functions mediated by interaction of CD4 with major histocompatibility complex (MHC) class II molecules. We report here the crystal structure of ibalizumab Fab fragment in complex with the first two domains (D1-D2) of CD4 at 2.2 Å resolution. Ibalizumab grips CD4 primarily by the BC-loop (residues 121-125) of D2, sitting on the opposite side of gp120 and MHC-II binding sites. No major conformational change in CD4 accompanies binding to ibalizumab. Both monovalent and bivalent forms of ibalizumab effectively block viral infection, suggesting that it does not need to crosslink CD4 to exert antiviral activity. While gp120-induced structural rearrangements in CD4 are probably minimal, CD4 structural rigidity is dispensable for ibalizumab inhibition. These results could guide CD4-based immunogen design and lead to a better understanding of HIV-1 entry.

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