3O0R image
Entry Detail
PDB ID:
3O0R
Title:
Crystal structure of nitric oxide reductase from Pseudomonas aeruginosa in complex with antibody fragment
Biological Source:
PDB Version:
Deposition Date:
2010-07-20
Release Date:
2010-12-29
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Nitric oxide reductase subunit B
Chain IDs:C (auth: B)
Chain Length:465
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa
Polymer Type:polypeptide(L)
Description:Nitric oxide reductase subunit C
Chain IDs:D (auth: C)
Chain Length:146
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa
Polymer Type:polypeptide(L)
Description:antibody fab fragment heavy chain
Chain IDs:B (auth: H)
Chain Length:225
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:antibody fab fragment light chain
Chain IDs:A (auth: L)
Chain Length:213
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
Structural basis of biological N2O generation by bacterial nitric oxide reductase
Science 330 1666 1670 (2010)
PMID: 21109633 DOI: 10.1126/science.1195591

Abstact

Nitric oxide reductase (NOR) is an iron-containing enzyme that catalyzes the reduction of nitric oxide (NO) to generate a major greenhouse gas, nitrous oxide (N(2)O). Here, we report the crystal structure of NOR from Pseudomonas aeruginosa at 2.7 angstrom resolution. The structure reveals details of the catalytic binuclear center. The non-heme iron (Fe(B)) is coordinated by three His and one Glu ligands, but a His-Tyr covalent linkage common in cytochrome oxidases (COX) is absent. This structural characteristic is crucial for NOR reaction. Although the overall structure of NOR is closely related to COX, neither the D- nor K-proton pathway, which connect the COX active center to the intracellular space, was observed. Protons required for the NOR reaction are probably provided from the extracellular side.

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