3NYK image
Deposition Date 2010-07-15
Release Date 2010-10-20
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3NYK
Title:
The structure of cobalt-substituted pseudoazurin from Alcaligenes faecalis
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.86 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.15
Space Group:
P 65
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pseudoazurin
Chain IDs:A
Chain Length:123
Number of Molecules:1
Biological Source:Alcaligenes faecalis
Ligand Molecules
Primary Citation
The crystal structure of cobalt-substituted pseudoazurin from Alcaligenes faecalis.
Biopolymers 95 202 207 (2011)
PMID: 20945335 DOI: 10.1002/bip.21553

Abstact

The Cu(II) center at the active site of the blue copper protein pseudoazurin from Alcaligenes faecalis has been substituted by Co(II) via denaturing of the protein, chelation and removal of copper by EDTA and refolding of the apo-protein, followed by addition of an aqueous solution of CoCl(2). Sitting drop vapour diffusion experiments produced green hexagonal crystals, which belong to space group P6(5), with unit cell dimensions a = b = 50.03, c = 98.80 Å. Diffraction data, collected at 291 K on a copper rotating anode X-ray source, were phased by the anomalous signal of the cobalt atom. The structure was built automatically, fitted manually and subsequently refined to 1.86 Å resolution. The Co-substituted protein exhibits similar overall geometry to the native structure with copper. Cobalt binds more strongly to the axial Met86-Sδ and retains the tetrahedral arrangement with the four ligand atoms, His40-Nδ(1), Cys78-Sγ, His81-Nδ(1), and 86Met-Sδ, although the structure is less distorted than the native copper protein. The structure reported herein, is the first crystallographic structure of a Co(II)-substituted pseudoazurin.

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Primary Citation of related structures