3NK3 image
Deposition Date 2010-06-18
Release Date 2010-11-10
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3NK3
Keywords:
Title:
Crystal structure of full-length sperm receptor ZP3 at 2.6 A resolution
Biological Source:
Source Organism:
Gallus gallus (Taxon ID: 9031)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Zona pellucida 3
Gene (Uniprot):ZP3
Chain IDs:A, B
Chain Length:297
Number of Molecules:2
Biological Source:Gallus gallus
Polymer Type:polypeptide(L)
Molecule:Zona pellucida 3
Gene (Uniprot):ZP3
Chain IDs:C, D
Chain Length:30
Number of Molecules:2
Biological Source:Gallus gallus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
THR A THR GLYCOSYLATION SITE
Ligand Molecules
Peptide-like Molecules
PRD_900084
Primary Citation

Abstact

ZP3, a major component of the zona pellucida (ZP) matrix coating mammalian eggs, is essential for fertilization by acting as sperm receptor. By retaining a propeptide that contains a polymerization-blocking external hydrophobic patch (EHP), we determined the crystal structure of an avian homolog of ZP3 at 2.0 Å resolution. The structure unveils the fold of a complete ZP domain module in a homodimeric arrangement required for secretion and reveals how EHP prevents premature incorporation of ZP3 into the ZP. This suggests mechanisms underlying polymerization and how local structural differences, reflected by alternative disulfide patterns, control the specificity of ZP subunit interaction. Close relative positioning of a conserved O-glycan important for sperm binding and the hypervariable, positively selected C-terminal region of ZP3 suggests a concerted role in the regulation of species-restricted gamete recognition. Alternative conformations of the area around the O-glycan indicate how sperm binding could trigger downstream events via intramolecular signaling.

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Primary Citation of related structures