3NGG image
Entry Detail
PDB ID:
3NGG
Keywords:
Title:
X-ray Structure of Omwaprin
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2010-06-11
Release Date:
2010-09-08
Method Details:
Experimental Method:
Resolution:
1.33 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21/c 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Omwaprin-a
Chain IDs:A, B
Chain Length:50
Number of Molecules:2
Biological Source:Oxyuranus microlepidotus
Primary Citation
Determination of the X-ray structure of the snake venom protein omwaprin by total chemical synthesis and racemic protein crystallography.
Protein Sci. 19 1840 1849 (2010)
PMID: 20669184 DOI: 10.1002/pro.468

Abstact

The 50-residue snake venom protein L-omwaprin and its enantiomer D-omwaprin were prepared by total chemical synthesis. Radial diffusion assays were performed against Bacillus megaterium and Bacillus anthracis; both L- and D-omwaprin showed antibacterial activity against B. megaterium. The native protein enantiomer, made of L-amino acids, failed to crystallize readily. However, when a racemic mixture containing equal amounts of L- and D-omwaprin was used, diffraction quality crystals were obtained. The racemic protein sample crystallized in the centrosymmetric space group P2(1)/c and its structure was determined at atomic resolution (1.33 A) by a combination of Patterson and direct methods based on the strong scattering from the sulfur atoms in the eight cysteine residues per protein. Racemic crystallography once again proved to be a valuable method for obtaining crystals of recalcitrant proteins and for determining high-resolution X-ray structures by direct methods.

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