3NCH image
Deposition Date 2010-06-04
Release Date 2010-10-06
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3NCH
Keywords:
Title:
Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.88 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glycogen [starch] synthase isoform 2
Gene (Uniprot):GSY2
Mutations:R580A, R581A, R583A
Chain IDs:A, B, C, D
Chain Length:725
Number of Molecules:4
Biological Source:Saccharomyces cerevisiae
Ligand Molecules
Primary Citation
Structural basis for glucose-6-phosphate activation of glycogen synthase.
Proc.Natl.Acad.Sci.USA 107 17563 17568 (2010)
PMID: 20876143 DOI: 10.1073/pnas.1006340107

Abstact

Regulation of the storage of glycogen, one of the major energy reserves, is of utmost metabolic importance. In eukaryotes, this regulation is accomplished through glucose-6-phosphate levels and protein phosphorylation. Glycogen synthase homologs in bacteria and archaea lack regulation, while the eukaryotic enzymes are inhibited by protein kinase mediated phosphorylation and activated by protein phosphatases and glucose-6-phosphate binding. We determined the crystal structures corresponding to the basal activity state and glucose-6-phosphate activated state of yeast glycogen synthase-2. The enzyme is assembled into an unusual tetramer by an insertion unique to the eukaryotic enzymes, and this subunit interface is rearranged by the binding of glucose-6-phosphate, which frees the active site cleft and facilitates catalysis. Using both mutagenesis and intein-mediated phospho-peptide ligation experiments, we demonstrate that the enzyme's response to glucose-6-phosphate is controlled by Arg583 and Arg587, while four additional arginine residues present within the same regulatory helix regulate the response to phosphorylation.

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Primary Citation of related structures