3N9H image
Deposition Date 2010-05-30
Release Date 2010-08-25
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3N9H
Keywords:
Title:
Crystal Structural of mutant Y305A in the copper amine oxidase from hansenula polymorpha
Biological Source:
Source Organism:
Pichia angusta (Taxon ID: 4905)
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.19
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Peroxisomal primary amine oxidase
Gene (Uniprot):AMO
Mutations:Y305A
Chain IDs:A, B, C, D, E, F
Chain Length:692
Number of Molecules:6
Biological Source:Pichia angusta
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
TPQ A TYR ?
Ligand Molecules
Primary Citation
Mutation at a strictly conserved, active site tyrosine in the copper amine oxidase leads to uncontrolled oxygenase activity.
Biochemistry 49 7393 7402 (2010)
PMID: 20684524 DOI: 10.1021/bi100643y

Abstact

The copper amine oxidases carry out two copper-dependent processes: production of their own redox-active cofactor (2,4,5-trihydroxyphenylalanine quinone, TPQ) and the subsequent oxidative deamination of substrate amines. Because the same active site pocket must facilitate both reactions, individual active site residues may serve multiple roles. We have examined the roles of a strictly conserved active site tyrosine Y305 in the copper amine oxidase from Hansenula polymorpha kinetically, spetroscopically (Dubois and Klinman (2006) Biochemistry 45, 3178), and, in the present work, structurally. While the Y305A enzyme is almost identical to the wild type, a novel, highly oxygenated species replaces TPQ in the Y305F active sites. This new structure not only provides the first direct detection of peroxy intermediates in cofactor biogenesis but also indicates the critical control of oxidation chemistry that can be conferred by a single active site residue.

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