3N8Y image
Entry Detail
PDB ID:
3N8Y
Keywords:
Title:
Structure of Aspirin Acetylated Cyclooxygenase-1 in Complex with Diclofenac
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2010-05-28
Release Date:
2010-07-28
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 65
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Prostaglandin G/H synthase 1
Chain IDs:A
Chain Length:553
Number of Molecules:1
Biological Source:Ovis aries
Polymer Type:polypeptide(L)
Description:Prostaglandin G/H synthase 1
Chain IDs:B
Chain Length:553
Number of Molecules:1
Biological Source:Ovis aries
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN B ASN GLYCOSYLATION SITE
OAS B SER O-ACETYLSERINE
Primary Citation
Comparison of Cyclooxygenase-1 Crystal Structures: Cross-Talk between Monomers Comprising Cyclooxygenase-1 Homodimers
Biochemistry 49 7069 7079 (2010)
PMID: 20669977 DOI: 10.1021/bi1003298

Abstact

Prostaglandin endoperoxide H synthases (PGHSs)-1 and -2 (also called cyclooxygenases (COXs)-1 and -2) catalyze the committed step in prostaglandin biosynthesis. Both isoforms are targets of nonsteroidal antiinflammatory drugs (NSAIDs). PGHSs are homodimers that exhibit half-of-sites COX activity; moreover, some NSAIDs cause enzyme inhibition by binding only one monomer. To learn more about the cross-talk that must be occurring between the monomers comprising each PGHS-1 dimer, we analyzed structures of PGHS-1 crystallized under five different conditions including in the absence of any tightly binding ligand and in the presence of nonspecific NSAIDs and of a COX-2 inhibitor. When crystallized with substoichiometric amounts of an NSAID, both monomers are often fully occupied with inhibitor; thus, the enzyme prefers to crystallize in a fully occupied form. In comparing the five structures, we only observe changes in the positions of residues 123-129 and residues 510-515. In cases where one monomer is fully occupied with an NSAID and the partner monomer is incompletely occupied, an alternate conformation of the loop involving residues 123-129 is seen in the partially occupied monomer. We propose, on the basis of this observation and previous cross-linking studies, that cross-talk between monomers involves this mobile 123-129 loop, which is located at the dimer interface. In ovine PGHS-1 crystallized in the absence of an NSAID, there is an alternative route for substrate entry into the COX site different than the well-known route through the membrane binding domain.

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Primary Citation of related structures