3N7X image
Deposition Date 2010-05-27
Release Date 2010-11-17
Last Version Date 2024-04-03
Entry Detail
PDB ID:
3N7X
Keywords:
Title:
Crystal structure of Penaeus stylirostris densovirus capsid
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.28
R-Value Work:
0.27
R-Value Observed:
0.27
Space Group:
P 21 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Capsid protein
Chain IDs:A
Chain Length:329
Number of Molecules:1
Biological Source:Infectious hypodermal and hematopoietic necrosis virus
Primary Citation
Structure of Penaeus stylirostris densovirus, a shrimp pathogen.
J.Virol. 84 11289 11296 (2010)
PMID: 20702621 DOI: 10.1128/JVI.01240-10

Abstact

Penaeus stylirostris densovirus (PstDNV), a pathogen of penaeid shrimp, causes significant damage to farmed and wild shrimp populations. In contrast to other parvoviruses, PstDNV probably has only one type of capsid protein that lacks the phospholipase A2 activity that has been implicated as a requirement during parvoviral host cell infection. The structure of recombinant virus-like particles, composed of 60 copies of the 37.5-kDa coat protein, the smallest parvoviral capsid protein reported thus far, was determined to 2.5-Å resolution by X-ray crystallography. The structure represents the first near-atomic resolution structure within the genus Brevidensovirus. The capsid protein has a β-barrel "jelly roll" motif similar to that found in many icosahedral viruses, including other parvoviruses. The N-terminal portion of the PstDNV coat protein adopts a "domain-swapped" conformation relative to its twofold-related neighbor similar to the insect parvovirus Galleria mellonella densovirus (GmDNV) but in stark contrast to vertebrate parvoviruses. However, most of the surface loops have little structural resemblance to any of the known parvoviral capsid proteins.

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