3N5F image
Deposition Date 2010-05-25
Release Date 2011-05-25
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3N5F
Keywords:
Title:
Crystal Structure of L-N-carbamoylase from Geobacillus stearothermophilus CECT43
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.75 Å
R-Value Free:
0.27
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:N-carbamoyl-L-amino acid hydrolase
Gene (Uniprot):amaB
Chain IDs:A, B
Chain Length:408
Number of Molecules:2
Biological Source:Bacillus stearothermophilus
Primary Citation
Mutational and structural analysis of L-N-carbamoylase reveals new insights into a peptidase m20/m25/m40 family member.
J.Bacteriol. 194 5759 5768 (2012)
PMID: 22904279 DOI: 10.1128/JB.01056-12

Abstact

N-Carbamoyl-L-amino acid amidohydrolases (L-carbamoylases) are important industrial enzymes used in kinetic resolution of racemic mixtures of N-carbamoyl-amino acids due to their strict enantiospecificity. In this work, we report the first L-carbamoylase structure belonging to Geobacillus stearothermophilus CECT43 (BsLcar), at a resolution of 2.7 Å. Structural analysis of BsLcar and several members of the peptidase M20/M25/M40 family confirmed the expected conserved residues at the active site in this family, and site-directed mutagenesis revealed their relevance to substrate binding. We also found an unexpectedly conserved arginine residue (Arg(234) in BsLcar), proven to be critical for dimerization of the enzyme. The mutation of this sole residue resulted in a total loss of activity and prevented the formation of the dimer in BsLcar. Comparative studies revealed that the dimerization domain of the peptidase M20/M25/M40 family is a "small-molecule binding domain," allowing further evolutionary considerations for this enzyme family.

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Primary Citation of related structures
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