3N5E image
Deposition Date 2010-05-25
Release Date 2011-06-08
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3N5E
Title:
Crystal Structure of human thymidylate synthase bound to a peptide inhibitor
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
(Taxon ID: )
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.26 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 31
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Thymidylate synthase
Gene (Uniprot):TYMS
Chain IDs:A
Chain Length:325
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Thymidylate synthase
Gene (Uniprot):TYMS
Chain IDs:B
Chain Length:325
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Synthetic peptide LR
Chain IDs:C (auth: D)
Chain Length:8
Number of Molecules:1
Biological Source:
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SCH A CYS S-METHYL-THIO-CYSTEINE
Ligand Molecules
Peptide-like Molecules
PRD_000970
Primary Citation
Protein-protein interface-binding peptides inhibit the cancer therapy target human thymidylate synthase.
Proc.Natl.Acad.Sci.USA 108 E542 E549 (2011)
PMID: 21795601 DOI: 10.1073/pnas.1104829108

Abstact

Human thymidylate synthase is a homodimeric enzyme that plays a key role in DNA synthesis and is a target for several clinically important anticancer drugs that bind to its active site. We have designed peptides to specifically target its dimer interface. Here we show through X-ray diffraction, spectroscopic, kinetic, and calorimetric evidence that the peptides do indeed bind at the interface of the dimeric protein and stabilize its di-inactive form. The "LR" peptide binds at a previously unknown binding site and shows a previously undescribed mechanism for the allosteric inhibition of a homodimeric enzyme. It inhibits the intracellular enzyme in ovarian cancer cells and reduces cellular growth at low micromolar concentrations in both cisplatin-sensitive and -resistant cells without causing protein overexpression. This peptide demonstrates the potential of allosteric inhibition of hTS for overcoming platinum drug resistance in ovarian cancer.

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Primary Citation of related structures