3MX0 image
Deposition Date 2010-05-06
Release Date 2010-06-30
Last Version Date 2024-10-30
Entry Detail
PDB ID:
3MX0
Title:
Crystal Structure of EphA2 ectodomain in complex with ephrin-A5
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.51 Å
R-Value Free:
0.29
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ephrin type-A receptor 2
Gene (Uniprot):EPHA2
Chain IDs:A, C
Chain Length:409
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ephrin-A5
Gene (Uniprot):EFNA5
Chain IDs:B, D
Chain Length:138
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN B ASN GLYCOSYLATION SITE
Ligand Molecules
Peptide-like Molecules
PRD_900017
Primary Citation
Architecture of Eph receptor clusters.
Proc.Natl.Acad.Sci.USA 107 10860 10865 (2010)
PMID: 20505120 DOI: 10.1073/pnas.1004148107

Abstact

Eph receptor tyrosine kinases and their ephrin ligands regulate cell navigation during normal and oncogenic development. Signaling of Ephs is initiated in a multistep process leading to the assembly of higher-order signaling clusters that set off bidirectional signaling in interacting cells. However, the structural and mechanistic details of this assembly remained undefined. Here we present high-resolution structures of the complete EphA2 ectodomain and complexes with ephrin-A1 and A5 as the base unit of an Eph cluster. The structures reveal an elongated architecture with novel Eph/Eph interactions, both within and outside of the Eph ligand-binding domain, that suggest the molecular mechanism underlying Eph/ephrin clustering. Structure-function analysis, by using site-directed mutagenesis and cell-based signaling assays, confirms the importance of the identified oligomerization interfaces for Eph clustering.

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Primary Citation of related structures