3MCY image
Deposition Date 2010-03-29
Release Date 2010-06-16
Last Version Date 2024-10-30
Entry Detail
PDB ID:
3MCY
Title:
Crystal structure of FimH lectin domain bound to biphenyl mannoside meta-methyl ester.
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 41 3 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:FimH
Gene (Uniprot):fimH
Chain IDs:A, B (auth: D), C (auth: B), D (auth: C)
Chain Length:181
Number of Molecules:4
Biological Source:Escherichia coli
Primary Citation
Structure-based drug design and optimization of mannoside bacterial FimH antagonists.
J.Med.Chem. 53 4779 4792 (2010)
PMID: 20507142 DOI: 10.1021/jm100438s

Abstact

FimH-mediated cellular adhesion to mannosylated proteins is critical in the ability of uropathogenic E. coli (UPEC) to colonize and invade the bladder epithelium during urinary tract infection. We describe the discovery and optimization of potent small-molecule FimH bacterial adhesion antagonists based on alpha-d-mannose 1-position anomeric glycosides using X-ray structure-guided drug design. Optimized biarylmannosides display low nanomolar binding affinity for FimH in a fluorescence polarization assay and submicromolar cellular activity in a hemagglutination (HA) functional cell assay of bacterial adhesion. X-ray crystallography demonstrates that the biphenyl moiety makes several key interactions with the outer surface of FimH including pi-pi interactions with Tyr-48 and an H-bonding electrostatic interaction with the Arg-98/Glu-50 salt bridge. Dimeric analogues linked through the biaryl ring show an impressive 8-fold increase in potency relative to monomeric matched pairs and represent the most potent FimH antagonists identified to date. The FimH antagonists described herein hold great potential for development as novel therapeutics for the effective treatment of urinary tract infections.

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