3MBX image
Deposition Date 2010-03-26
Release Date 2010-06-30
Last Version Date 2024-11-06
Entry Detail
PDB ID:
3MBX
Keywords:
Title:
Crystal structure of chimeric antibody X836
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:X836 HEAVY CHAIN
Chain IDs:B (auth: H)
Chain Length:230
Number of Molecules:1
Biological Source:Mus musculus, Homo sapiens
Polymer Type:polypeptide(L)
Molecule:X836 LIGHT CHAIN
Chain IDs:A (auth: L)
Chain Length:220
Number of Molecules:1
Biological Source:Mus musculus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PCA B GLN PYROGLUTAMIC ACID
Primary Citation
On the domain pairing in chimeric antibodies.
Mol.Immunol. 47 2422 2426 (2010)
PMID: 20554002 DOI: 10.1016/j.molimm.2010.05.002

Abstact

A chimeric antibody was constructed from two unrelated antibodies by combining their heavy and light chains. The "double chimera" consists of the mouse variable regions of different specificity (IL-13 and EMMPRIN) and the constant regions of different origin (mouse and human). The Fab fragment of this chimeric antibody was expressed in mammalian cells, and the crystal structure was determined at 1.6A resolution. Despite a large number of amino acid substitutions in the double chimera with respect to the parent antibodies, the heavy and light chains associate into a stable molecule. Comparison to the structure of one of the parent antibodies reveals that the variable domain interface, as well as the conformation of antigen-binding loops, is preserved without major rearrangements due to conservation of amino acids in key positions. Comparison to the structures of the all-human and all-mouse constant domains indicates a remarkable plasticity of the inter-chain interface that can tolerate residue relocations of up to 6A.

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Primary Citation of related structures
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