3MBE image
Entry Detail
PDB ID:
3MBE
Keywords:
Title:
TCR 21.30 in complex with MHC class II I-Ag7HEL(11-27)
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2010-03-25
Release Date:
2010-05-12
Method Details:
Experimental Method:
Resolution:
2.89 Å
R-Value Free:
0.28
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:MHC CLASS II H2-IAg7 ALPHA CHAIN
Chain IDs:A, F (auth: E)
Chain Length:190
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:MHC CLASS II H2-IAg7 BETA CHAIN
Chain IDs:B, G (auth: F)
Chain Length:201
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:TCR 21.3 alpha chain
Chain IDs:D (auth: C), I (auth: G)
Chain Length:229
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:TCR 21.3 beta chain
Chain IDs:E (auth: D), J (auth: H)
Chain Length:259
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:PEPTIDE HEL 11-27
Chain IDs:C (auth: P), H (auth: Q)
Chain Length:18
Number of Molecules:2
Biological Source:Gallus gallus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
The diabetogenic mouse MHC class II molecule I-Ag7 is endowed with a switch that modulates TCR affinity.
J.Clin.Invest. 120 1578 1590 (2010)
PMID: 20407212 DOI: 10.1172/JCI41502

Abstact

Genetic susceptibility to autoimmunity is frequently associated with specific MHC alleles. Diabetogenic MHC class II molecules, such as human HLA-DQ8 and mouse I-Ag7, typically have a small, uncharged amino acid residue at position 57 of their beta chain (beta57); this results in the absence of a salt bridge between beta57 and Argalpha76, which is adjacent to the P9 pocket of the peptide-binding groove. However, the influence of Argalpha76 on the selection of the TCR repertoire remains unknown, particularly when the MHC molecule binds a peptide with a neutral amino acid residue at position P9. Here, we have shown that diabetogenic MHC class II molecules bound to a peptide with a neutral P9 residue primarily selected and expanded cells expressing TCRs bearing a negatively charged residue in the first segment of their complementarity determining region 3beta. The crystal structure of one such TCR in complex with I-Ag7 bound to a peptide containing a neutral P9 residue revealed that a network of favorable long-range (greater than 4 A) electrostatic interactions existed among Argalpha76, the neutral P9 residue, and TCR, which supported the substantially increased TCR/peptide-MHC affinity. This network could be modulated or switched to a lower affinity interaction by the introduction of a negative charge at position P9 of the peptide. Our results support the existence of a switch at residue beta57 of the I-Ag7 and HLA-DQ8 class II molecules and potentially link normal thymic TCR selection with abnormal peripheral behavior.

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Primary Citation of related structures