3LZF image
Deposition Date 2010-03-01
Release Date 2010-04-07
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3LZF
Title:
Crystal Structure of Fab 2D1 in Complex with the 1918 Influenza Virus Hemagglutinin
Biological Source:
Source Organism:
Influenza A virus (Taxon ID: 59375)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.25
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 3 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin, HA1 Subunit
Gene (Uniprot):HA
Chain IDs:A
Chain Length:331
Number of Molecules:1
Biological Source:Influenza A virus
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin, HA2 Subunit
Gene (Uniprot):HA
Chain IDs:B
Chain Length:179
Number of Molecules:1
Biological Source:Influenza A virus
Polymer Type:polypeptide(L)
Molecule:2D1 Fab, Heavy Chain
Chain IDs:C (auth: H)
Chain Length:230
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:2D1 Fab, Light Chain
Chain IDs:D (auth: L)
Chain Length:217
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Structural basis of preexisting immunity to the 2009 H1N1 pandemic influenza virus.
Science 328 357 360 (2010)
PMID: 20339031 DOI: 10.1126/science.1186430

Abstact

The 2009 H1N1 swine flu is the first influenza pandemic in decades. The crystal structure of the hemagglutinin from the A/California/04/2009 H1N1 virus shows that its antigenic structure, particularly within the Sa antigenic site, is extremely similar to those of human H1N1 viruses circulating early in the 20th century. The cocrystal structure of the 1918 hemagglutinin with 2D1, an antibody from a survivor of the 1918 Spanish flu that neutralizes both 1918 and 2009 H1N1 viruses, reveals an epitope that is conserved in both pandemic viruses. Thus, antigenic similarity between the 2009 and 1918-like viruses provides an explanation for the age-related immunity to the current influenza pandemic.

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Disease

Primary Citation of related structures