3LW5 image
Entry Detail
PDB ID:
3LW5
Keywords:
Title:
Improved model of plant photosystem I
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2010-02-23
Release Date:
2010-08-18
Method Details:
Experimental Method:
Resolution:
3.30 Å
R-Value Free:
0.38
R-Value Work:
0.34
R-Value Observed:
0.35
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:AT3g54890
Chain IDs:O (auth: 1)
Chain Length:170
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Type II chlorophyll a/b binding protein from photosystem I
Chain IDs:P (auth: 2)
Chain Length:176
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Chlorophyll a-b binding protein 3, chloroplastic
Chain IDs:Q (auth: 3)
Chain Length:172
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Chlorophyll a-b binding protein P4, chloroplastic
Chain IDs:R (auth: 4)
Chain Length:166
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Photosystem I P700 chlorophyll a apoprotein A1
Chain IDs:A
Chain Length:738
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Photosystem I P700 chlorophyll a apoprotein A2
Chain IDs:B
Chain Length:733
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Photosystem I iron-sulfur center
Chain IDs:C
Chain Length:81
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Putative uncharacterized protein
Chain IDs:D
Chain Length:138
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Putative uncharacterized protein
Chain IDs:E
Chain Length:64
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit III, chloroplastic
Chain IDs:F
Chain Length:154
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Putative uncharacterized protein
Chain IDs:G
Chain Length:95
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Putative uncharacterized protein
Chain IDs:H
Chain Length:69
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit VIII
Chain IDs:I
Chain Length:30
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit IX
Chain IDs:J
Chain Length:42
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit X psaK
Chain IDs:K
Chain Length:84
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Putative uncharacterized protein
Chain IDs:L
Chain Length:161
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:Photosystem I-N subunit
Chain IDs:M (auth: N)
Chain Length:85
Number of Molecules:1
Biological Source:Pisum sativum
Polymer Type:polypeptide(L)
Description:CHAIN R
Chain IDs:N (auth: R)
Chain Length:53
Number of Molecules:1
Biological Source:unidentified
Primary Citation
Structure determination and improved model of plant photosystem I
J.Biol.Chem. 285 3478 3486 (2010)
PMID: 19923216 DOI: 10.1074/jbc.M109.072645

Abstact

Photosystem I functions as a sunlight energy converter, catalyzing one of the initial steps in driving oxygenic photosynthesis in cyanobacteria, algae, and higher plants. Functionally, Photosystem I captures sunlight and transfers the excitation energy through an intricate and precisely organized antenna system, consisting of a pigment network, to the center of the molecule, where it is used in the transmembrane electron transfer reaction. Our current understanding of the sophisticated mechanisms underlying these processes has profited greatly from elucidation of the crystal structures of the Photosystem I complex. In this report, we describe the developments that ultimately led to enhanced structural information of plant Photosystem I. In addition, we report an improved crystallographic model at 3.3-A resolution, which allows analysis of the structure in more detail. An improved electron density map yielded identification and tracing of subunit PsaK. The location of an additional ten beta-carotenes as well as five chlorophylls and several loop regions, which were previously uninterpretable, are now modeled. This represents the most complete plant Photosystem I structure obtained thus far, revealing the locations of and interactions among 17 protein subunits and 193 non-covalently bound photochemical cofactors. Using the new crystal structure, we examine the network of contacts among the protein subunits from the structural perspective, which provide the basis for elucidating the functional organization of the complex.

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