3LQ0 image
Deposition Date 2010-02-08
Release Date 2010-02-23
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3LQ0
Keywords:
Title:
Zymogen structure of crayfish astacin metallopeptidase
Biological Source:
Source Organism:
Astacus astacus (Taxon ID: 6715)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.45 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ProAstacin
Mutations:I91L,E93A
Chain IDs:A
Chain Length:235
Number of Molecules:1
Biological Source:Astacus astacus
Primary Citation
Proenzyme structure and activation of astacin metallopeptidase
J.Biol.Chem. 285 13958 13965 (2010)
PMID: 20202938 DOI: 10.1074/jbc.M109.097436

Abstact

Proteolysis is regulated by inactive (latent) zymogens, with a prosegment preventing access of substrates to the active-site cleft of the enzyme. How latency is maintained often depends on the catalytic mechanism of the protease. For example, in several families of the metzincin metallopeptidases, a "cysteine switch" mechanism involves a conserved prosegment motif with a cysteine residue that coordinates the catalytic zinc ion. Another family of metzincins, the astacins, do not possess a cysteine switch, so latency is maintained by other means. We have solved the high resolution crystal structure of proastacin from the European crayfish, Astacus astacus. Its prosegment is the shortest structurally reported for a metallopeptidase, and it has a unique structure. It runs through the active-site cleft in reverse orientation to a genuine substrate. Moreover, a conserved aspartate, projected by a wide loop of the prosegment, coordinates the zinc ion instead of the catalytic solvent molecule found in the mature enzyme. Activation occurs through two-step limited proteolysis and entails major rearrangement of a flexible activation domain, which becomes rigid and creates the base of the substrate-binding cleft. Maturation also requires the newly formed N terminus to be precisely trimmed so that it can participate in a buried solvent-mediated hydrogen-bonding network, which includes an invariant active-site residue. We describe a novel mechanism for latency and activation, which shares some common features both with other metallopeptidases and with serine peptidases.

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