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Entry Detail
PDB ID:
3LOB
Keywords:
Title:
Crystal Structure of Flock House Virus calcium mutant
Biological Source:
PDB Version:
Deposition Date:
2010-02-03
Release Date:
2010-04-21
Method Details:
Experimental Method:
Resolution:
3.60 Å
R-Value Work:
0.34
R-Value Observed:
0.34
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Coat protein beta
Mutations:D161N, D221N, D249N, E251Q, E257Q
Chain IDs:A, B, C
Chain Length:363
Number of Molecules:3
Biological Source:Flock house virus
Polymer Type:polypeptide(L)
Description:Coat protein gamma
Chain IDs:D, E, F
Chain Length:44
Number of Molecules:3
Biological Source:Flock house virus
Polymer Type:polyribonucleotide
Description:RNA (5'-R(*UP*UP*U*AP*UP*CP*UP*(P))-3')
Chain IDs:G (auth: R)
Chain Length:8
Number of Molecules:1
Biological Source:Spodoptera frugiperda
Ligand Molecules
Primary Citation
Structure and function of a genetically engineered mimic of a nonenveloped virus entry intermediate.
J.Virol. 84 4737 4746 (2010)
PMID: 20164221 DOI: 10.1128/JVI.02670-09

Abstact

Divalent metal ions are components of numerous icosahedral virus capsids. Flock House virus (FHV), a small RNA virus of the family Nodaviridae, was utilized as an accessible model system with which to address the effects of metal ions on capsid structure and on the biology of virus-host interactions. Mutations at the calcium-binding sites affected FHV capsid stability and drastically reduced virus infectivity, without altering the overall architecture of the capsid. The mutations also altered the conformation of gamma, a membrane-disrupting, virus-encoded peptide usually sequestered inside the capsid, by increasing its exposure under neutral pH conditions. Our data demonstrate that calcium binding is essential for maintaining a pH-based control on gamma exposure and host membrane disruption, and they reveal a novel rationale for the metal ion requirement during virus entry and infectivity. In the light of the phenotypes displayed by a calcium site mutant of FHV, we suggest that this mutant corresponds to an early entry intermediate formed in the endosomal pathway.

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Primary Citation of related structures