3LO1 image
Deposition Date 2010-02-03
Release Date 2010-03-09
Last Version Date 2024-10-09
Entry Detail
PDB ID:
3LO1
Title:
Crystal structure of human alpha-defensin 1 (Y16A mutant)
Biological Source:
Source Organism:
(Taxon ID: )
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Neutrophil defensin 1
Gene (Uniprot):DEFA1, DEFA1B
Mutations:Y16A
Chain IDs:A
Chain Length:30
Number of Molecules:1
Biological Source:
Primary Citation
Trp-26 imparts functional versatility to human alpha-defensin HNP1.
J.Biol.Chem. 285 16275 16285 (2010)
PMID: 20220136 DOI: 10.1074/jbc.M110.102749

Abstact

We performed a comprehensive alanine scan of human alpha-defensin HNP1 and tested the ability of the resulting analogs to kill Staphylococcus aureus, inhibit anthrax lethal factor, and bind human immunodeficiency virus-1 gp120. By far, the most deleterious mutation for all of these functions was W26A. The activities lost by W26A-HNP1 were restored progressively by replacing W26 with non-coded, straight-chain aliphatic amino acids of increasing chain length. The hydrophobicity of residue 26 also correlated with the ability of the analogs to bind immobilized wild type HNP1 and to undergo further self-association. Thus, the hydrophobicity of residue 26 is not only a key determinant of the direct interactions of HNP1 with target molecules, but it also governs the ability of this peptide to form dimers and more complex quaternary structures at micromolar concentrations. Although all defensin peptides are cationic, their amphipathicity is at least as important as their positive charge in enabling them to participate in innate host defense.

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