3LMP image
Deposition Date 2010-01-31
Release Date 2010-04-14
Last Version Date 2023-11-01
Entry Detail
PDB ID:
3LMP
Keywords:
Title:
Crystal structure of the PPARgamma-LBD complexed with a cercosporamide derivative modulator
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Peroxisome proliferator-activated receptor gamma
Gene (Uniprot):PPARG
Chain IDs:A
Chain Length:283
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Peptide of Nuclear receptor coactivator 1
Gene (Uniprot):NCOA1
Chain IDs:B (auth: C)
Chain Length:15
Number of Molecules:1
Biological Source:
Ligand Molecules
Primary Citation
Discovery of a novel selective PPARgamma modulator from (-)-Cercosporamide derivatives
Bioorg.Med.Chem.Lett. 20 2095 2098 (2010)
PMID: 20219371 DOI: 10.1016/j.bmcl.2010.02.073

Abstact

In an investigation of (-)-Cercosporamide derivatives with a plasma glucose-lowering effect, we found that N-benzylcarboxamide derivative 4 was a partial agonist of PPARgamma. A SAR study of the substituents on carboxamide nitrogen afforded the N-(1-naphthyl)methylcarboxamide derivative 23 as the most potent selective PPARgamma modulator. An X-ray crystallography study revealed that compound 23 bounded to the PPARgamma ligand binding domain in a unique way without any interaction with helix12. Compound 23 displayed a potent plasma glucose-lowering effect in db/db mice without the undesirable increase in body fluid and heart weight that is typically observed when PPARgamma full agonists are administrated.

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Primary Citation of related structures
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