3LIM image
Entry Detail
PDB ID:
3LIM
Keywords:
Title:
Crystal structure of the pore forming toxin frac from sea anemone actinia fragacea
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2010-01-25
Release Date:
2010-12-15
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 63 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Fragaceatoxin C
Chain IDs:A, B, C, D, E, F
Chain Length:178
Number of Molecules:6
Biological Source:Actinia fragacea
Ligand Molecules
Primary Citation
Structural insights into the oligomerization and architecture of eukaryotic membrane pore-forming toxins.
Structure 19 181 191 (2011)
PMID: 21300287 DOI: 10.1016/j.str.2010.11.013

Abstact

Pore-forming toxins (PFTs) are proteins that are secreted as soluble molecules and are inserted into membranes to form oligomeric transmembrane pores. In this paper, we report the crystal structure of Fragaceatoxin C (FraC), a PFT isolated from the sea anemone Actinia fragacea, at 1.8 Å resolution. It consists of a crown-shaped nonamer with an external diameter of about 11.0 nm and an internal diameter of approximately 5.0 nm. Cryoelectron microscopy studies of FraC in lipid bilayers reveal the pore structure that traverses the membrane. The shape and dimensions of the crystallographic oligomer are fully consistent with the membrane pore. The FraC structure provides insight into the interactions governing the assembly process and suggests the structural changes that allow for membrane insertion. We propose a nonameric pore model that spans the membrane by forming a lipid-free α-helical bundle pore.

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