3LGN image
Deposition Date 2010-01-20
Release Date 2010-03-09
Last Version Date 2023-11-01
Entry Detail
PDB ID:
3LGN
Keywords:
Title:
Crystal structure of IsdI in complex with heme
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Heme-degrading monooxygenase isdI
Gene (Uniprot):isdI
Chain IDs:A, B
Chain Length:110
Number of Molecules:2
Biological Source:Staphylococcus aureus
Primary Citation
The IsdG-family of haem oxygenases degrades haem to a novel chromophore
Mol.Microbiol. 75 1529 1538 (2010)
PMID: 20180905 DOI: 10.1111/j.1365-2958.2010.07076.x

Abstact

Enzymatic haem catabolism by haem oxygenases is conserved from bacteria to humans and proceeds through a common mechanism leading to the formation of iron, carbon monoxide and biliverdin. The first members of a novel class of haem oxygenases were recently identified in Staphylococcus aureus (IsdG and IsdI) and were termed the IsdG-family of haem oxygenases. Enzymes of the IsdG-family form tertiary structures distinct from those of the canonical haem oxygenase family, suggesting that IsdG-family members degrade haem via a unique reaction mechanism. Herein we report that the IsdG-family of haem oxygenases degrade haem to the oxo-bilirubin chromophore staphylobilin. We also present the crystal structure of haem-bound IsdI in which haem ruffling and constrained binding of oxygen is consistent with cleavage of the porphyrin ring at the beta- or delta-meso carbons. Combined, these data establish that the IsdG-family of haem oxygenases degrades haem to a novel chromophore distinct from biliverdin.

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