ISDA

Deposition Date 2010-01-11

Release Date 2010-09-15

Last Version Date 2024-02-21

Entry Detail

PDB ID:

3LCO

Keywords:

TRANSFERASE

Title:

Inhibitor Bound to A DFG-Out structure of the Kinase Domain of CSF-1R

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Spodoptera frugiperda

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.40 Å

R-Value Free:

0.28

R-Value Work:

0.24

R-Value Observed:

0.24

Space Group:

P 43 21 2

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Macrophage colony-stimulating factor 1 receptor
Gene (Uniprot):CSF1R
Chain IDs:A
Chain Length:324
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P07333 Pfam ID:PF07714 EC:2.7.10.1

Ligand Molecules

LC0

Primary Citation

Structure-based drug design enables conversion of a DFG-in binding CSF-1R kinase inhibitor to a DFG-out binding mode.

Meyers, M.J, Pelc, M, Kamtekar, S, Day, J, Poda, G.I, Hall, M.K, Michener, M.L, Reitz, B.A, Mathis, K.J, Pierce, B.S, Parikh, M.D, Mischke, D.A, Long, S.A, Parlow, J.J, Anderson, D.R, Thorarensen, A.Show

Bioorg.Med.Chem.Lett. 20 1543 1547 (2010)

PMID: 20137931 DOI: 10.1016/j.bmcl.2010.01.078

Abstact

The work described herein demonstrates the utility of structure-based drug design (SBDD) in shifting the binding mode of an HTS hit from a DFG-in to a DFG-out binding mode resulting in a class of novel potent CSF-1R kinase inhibitors suitable for lead development.

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Primary Citation of related structures