3LBZ image
Deposition Date 2010-01-08
Release Date 2010-04-28
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3LBZ
Keywords:
Title:
Crystal Structure of the BCL6 BTB domain complexed with the small molecule inhibitor 79-6
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:B-cell lymphoma 6 protein
Gene (Uniprot):BCL6
Mutations:C8Q, C67R, C84N
Chain IDs:A, B
Chain Length:127
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
A small-molecule inhibitor of BCL6 kills DLBCL cells in vitro and in vivo.
Cancer Cell 17 400 411 (2010)
PMID: 20385364 DOI: 10.1016/j.ccr.2009.12.050

Abstact

The BCL6 transcriptional repressor is the most frequently involved oncogene in diffuse large B cell lymphoma (DLBCL). We combined computer-aided drug design with functional assays to identify low-molecular-weight compounds that bind to the corepressor binding groove of the BCL6 BTB domain. One such compound disrupted BCL6/corepressor complexes in vitro and in vivo, and was observed by X-ray crystallography and NMR to bind the critical site within the BTB groove. This compound could induce expression of BCL6 target genes and kill BCL6-positive DLBCL cell lines. In xenotransplantation experiments, the compound was nontoxic and potently suppressed DLBCL tumors in vivo. The compound also killed primary DLBCLs from human patients.

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Primary Citation of related structures