3L3M image
Deposition Date 2009-12-17
Release Date 2010-06-23
Last Version Date 2024-04-03
Entry Detail
PDB ID:
3L3M
Keywords:
Title:
PARP complexed with A927929
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.27
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 3 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Poly [ADP-ribose] polymerase 1
Gene (Uniprot):PARP1
Mutations:V762A
Chain IDs:A
Chain Length:350
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Optimization of phenyl-substituted benzimidazole carboxamide poly(ADP-ribose) polymerase inhibitors: identification of (S)-2-(2-fluoro-4-(pyrrolidin-2-yl)phenyl)-1H-benzimidazole-4-carboxamide (A-966492), a highly potent and efficacious inhibitor.
J.Med.Chem. 53 3142 3153 (2010)
PMID: 20337371 DOI: 10.1021/jm901775y

Abstact

We have developed a series of phenylpyrrolidine- and phenylpiperidine-substituted benzimidazole carboxamide poly(ADP-ribose) polymerase (PARP) inhibitors with excellent PARP enzyme potency as well as single-digit nanomolar cellular potency. These efforts led to the identification of (S)-2-(2-fluoro-4-(pyrrolidin-2-yl)phenyl)-1H-benzimidazole-4-carboxamide (22b, A-966492). Compound 22b displayed excellent potency against the PARP-1 enzyme with a K(i) of 1 nM and an EC(50) of 1 nM in a whole cell assay. In addition, 22b is orally bioavailable across multiple species, crosses the blood-brain barrier, and appears to distribute into tumor tissue. It also demonstrated good in vivo efficacy in a B16F10 subcutaneous murine melanoma model in combination with temozolomide and in an MX-1 breast cancer xenograft model both as a single agent and in combination with carboplatin.

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