3L35 image
Entry Detail
PDB ID:
3L35
Keywords:
Title:
PIE12 D-peptide against HIV entry
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2009-12-16
Release Date:
2010-11-03
Method Details:
Experimental Method:
Resolution:
1.55 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:GP41 N-PEPTIDE
Chain IDs:A, B, C
Chain Length:47
Number of Molecules:3
Biological Source:
Polymer Type:polypeptide(L)
Description:HIV ENTRY INHIBITOR PIE12
Chain IDs:D (auth: H), E (auth: K), F (auth: L)
Chain Length:18
Number of Molecules:3
Biological Source:
Primary Citation
Design of a potent D-peptide HIV-1 entry inhibitor with a strong barrier to resistance.
J.Virol. 84 11235 11244 (2010)
PMID: 20719956 DOI: 10.1128/JVI.01339-10

Abstact

The HIV gp41 N-trimer pocket region is an ideal viral target because it is extracellular, highly conserved, and essential for viral entry. Here, we report on the design of a pocket-specific D-peptide, PIE12-trimer, that is extraordinarily elusive to resistance and characterize its inhibitory and structural properties. D-peptides (peptides composed of D-amino acids) are promising therapeutic agents due to their insensitivity to protease degradation. PIE12-trimer was designed using structure-guided mirror-image phage display and linker optimization and is the first D-peptide HIV entry inhibitor with the breadth and potency required for clinical use. PIE12-trimer has an ultrahigh affinity for the gp41 pocket, providing it with a reserve of binding energy (resistance capacitor) that yields a dramatically improved resistance profile compared to those of other fusion inhibitors. These results demonstrate that the gp41 pocket is an ideal drug target and establish PIE12-trimer as a leading anti-HIV antiviral candidate.

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