3KZI image
Deposition Date 2009-12-08
Release Date 2010-06-16
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3KZI
Title:
Crystal Structure of Monomeric Form of Cyanobacterial Photosystem II
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.60 Å
R-Value Free:
0.30
R-Value Work:
0.29
R-Value Observed:
0.29
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem Q(B) protein 1
Gene (Uniprot):psbA1
Chain IDs:A
Chain Length:344
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II core light harvesting protein
Gene (Uniprot):psbB
Chain IDs:B
Chain Length:510
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP43 protein
Gene (Uniprot):psbC
Chain IDs:C
Chain Length:461
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II D2 protein
Gene (Uniprot):psbD1, psbD2
Chain IDs:D
Chain Length:352
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit alpha
Gene (Uniprot):psbE
Chain IDs:E
Chain Length:83
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit beta
Gene (Uniprot):psbF
Chain IDs:F
Chain Length:44
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein H
Gene (Uniprot):psbH
Chain IDs:G (auth: H)
Chain Length:65
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein I
Gene (Uniprot):psbI
Chain IDs:H (auth: I)
Chain Length:38
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein J
Gene (Uniprot):psbJ
Chain IDs:I (auth: J)
Chain Length:40
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein K
Gene (Uniprot):psbK
Chain IDs:J (auth: K)
Chain Length:37
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein L
Gene (Uniprot):psbL
Chain IDs:K (auth: L)
Chain Length:37
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein M
Gene (Uniprot):psbM
Chain IDs:L (auth: M)
Chain Length:36
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II manganese-stabilizing polypeptide
Gene (Uniprot):psbO
Chain IDs:M (auth: O)
Chain Length:246
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein T
Gene (Uniprot):psbT
Chain IDs:N (auth: T)
Chain Length:32
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II 12 kDa extrinsic protein
Gene (Uniprot):psbU
Chain IDs:O (auth: U)
Chain Length:104
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c-550
Gene (Uniprot):psbV
Chain IDs:P (auth: V)
Chain Length:137
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center X protein
Gene (Uniprot):psbX
Chain IDs:R (auth: X)
Chain Length:40
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein Z
Gene (Uniprot):psbZ
Chain IDs:S (auth: Z)
Chain Length:62
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein ycf12
Gene (Uniprot):psb30
Chain IDs:Q (auth: y)
Chain Length:46
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus
Primary Citation
Crystal Structure of Monomeric Photosystem II from Thermosynechococcus elongatus at 3.6-A Resolution
J.Biol.Chem. 285 26255 26262 (2010)
PMID: 20558739 DOI: 10.1074/jbc.M110.127589

Abstact

The membrane-embedded photosystem II core complex (PSIIcc) uses light energy to oxidize water in photosynthesis. Information about the spatial structure of PSIIcc obtained from x-ray crystallography was so far derived from homodimeric PSIIcc of thermophilic cyanobacteria. Here, we report the first crystallization and structural analysis of the monomeric form of PSIIcc with high oxygen evolution capacity, isolated from Thermosynechococcus elongatus. The crystals belong to the space group C222(1), contain one monomer per asymmetric unit, and diffract to a resolution of 3.6 A. The x-ray diffraction pattern of the PSIIcc-monomer crystals exhibit less anisotropy (dependence of resolution on crystal orientation) compared with crystals of dimeric PSIIcc, and the packing of the molecules within the unit cell is different. In the monomer, 19 protein subunits, 35 chlorophylls, two pheophytins, the non-heme iron, the primary plastoquinone Q(A), two heme groups, 11 beta-carotenes, 22 lipids, seven detergent molecules, and the Mn(4)Ca cluster of the water oxidizing complex could be assigned analogous to the dimer. Based on the new structural information, the roles of lipids and protein subunits in dimer formation of PSIIcc are discussed. Due to the lack of non-crystallographic symmetry and the orientation of the membrane normal of PSIIcc perpendicular (approximately 87 degrees) to the crystallographic b-axis, further information about the structure of the Mn(4)Ca cluster is expected to become available from orientation-dependent spectroscopy on this new crystal form.

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