3KYM image
Deposition Date 2009-12-06
Release Date 2010-03-16
Last Version Date 2024-10-16
Entry Detail
PDB ID:
3KYM
Keywords:
Title:
Crystal structure of Li33 IgG2 di-Fab
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.62 Å
R-Value Free:
0.33
R-Value Work:
0.25
R-Value Observed:
0.26
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Light Chain Li33 IgG2
Chain IDs:A, C, E, G, I, K, M, O
Chain Length:214
Number of Molecules:8
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Heavy Chain Li33 IgG2
Chain IDs:B, D, F, H, J, L, N, P
Chain Length:227
Number of Molecules:8
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Improving the solubility of anti-LINGO-1 monoclonal antibody Li33 by isotype switching and targeted mutagenesis.
Protein Sci. 19 954 966 (2010)
PMID: 20198683 DOI: 10.1002/pro.372

Abstact

Monoclonal antibodies (Mabs) are a favorite drug platform of the biopharmaceutical industry. Currently, over 20 Mabs have been approved and several hundred others are in clinical trials. The anti-LINGO-1 Mab Li33 was selected from a large panel of antibodies by Fab phage display technology based on its extraordinary biological activity in promoting oligodendrocyte differentiation and myelination in vitro and in animal models of remyelination. However, the Li33 Fab had poor solubility when converted into a full antibody in an immunoglobulin G1 framework. A detailed analysis of the biochemical and structural features of the antibody revealed several possible reasons for its propensity to aggregate. Here, we successfully applied three molecular approaches (isotype switching, targeted mutagenesis of complementarity determining region residues, and glycosylation site insertion mutagenesis) to address the solubility problem. Through these efforts we were able to improve the solubility of the Li33 Mab from 0.3 mg/mL to >50 mg/mL and reduce aggregation to an acceptable level. These strategies can be readily applied to other proteins with solubility issues.

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Primary Citation of related structures