3KV2 image
Deposition Date 2009-11-28
Release Date 2009-12-22
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3KV2
Keywords:
Title:
HIGH RESOLUTION STRUCTURE OF HUMAN ARGINASE I IN COMPLEX WITH THE STRONG INHIBITOR N(omega)-hydroxy-nor-L-arginine (nor-NOHA)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.55 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Arginase-1
Gene (Uniprot):ARG1
Chain IDs:A, B
Chain Length:322
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Inhibition of human arginase I by substrate and product analogues.
Arch.Biochem.Biophys. 496 101 108 (2010)
PMID: 20153713 DOI: 10.1016/j.abb.2010.02.004

Abstact

Human arginase I is a binuclear manganese metalloenzyme that catalyzes the hydrolysis of L-arginine to generate L-ornithine and urea. We demonstrate that N-hydroxy-L-arginine (NOHA) binds to this enzyme with K(d)=3.6 microM, and nor-N-hydroxy-L-arginine (nor-NOHA) binds with K(d)=517 nM (surface plasmon resonance) or K(d) approximately 50 nM (isothermal titration calorimetry). Crystals of human arginase I complexed with NOHA and nor-NOHA afford 2.04 and 1.55 A resolution structures, respectively, which are significantly improved in comparison with previously-determined structures of the corresponding complexes with rat arginase I. Higher resolution structures clarify the binding interactions of the inhibitors. Finally, the crystal structure of the complex with L-lysine (K(d)=13 microM) is reported at 1.90 A resolution. This structure confirms the importance of hydrogen bond interactions with inhibitor alpha-carboxylate and alpha-amino groups as key specificity determinants of amino acid recognition in the arginase active site.

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Primary Citation of related structures