3KT2 image
Deposition Date 2009-11-24
Release Date 2010-02-16
Last Version Date 2024-05-29
Entry Detail
PDB ID:
3KT2
Keywords:
Title:
Crystal Structure of N88D mutant HIV-1 Protease
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.65 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 61
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Protease
Gene (Uniprot):gag-pol
Mutations:N88D, C95M, N1088D, C1095M
Chain IDs:A
Chain Length:203
Number of Molecules:1
Biological Source:Human immunodeficiency virus type 1
Primary Citation
Resistance mechanism revealed by crystal structures of unliganded nelfinavir-resistant HIV-1 protease non-active site mutants N88D and N88S.
Biochem.Biophys.Res.Commun. 389 295 300 (2009)
PMID: 19720046 DOI: 10.1016/j.bbrc.2009.08.138

Abstact

Nelfinavir is an inhibitor of HIV-1 protease, and is used for treatment of patients suffering from HIV/AIDS. However, treatment results in drug resistant mutations in HIV-1 protease. N88D and N88S are two such mutations which occur in the non-active site region of the enzyme. We have determined crystal structures of unliganded N88D and N88S mutants of HIV-1 protease to resolution of 1.65A and 1.8A, respectively. These structures refined against synchrotron data lead to R-factors of 0.1859 and 0.1780, respectively. While structural effects of N88D are very subtle, the mutation N88S has caused a significant conformational change in D30, an active site residue crucial for substrate and inhibitor binding.

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Primary Citation of related structures