ISDA

Deposition Date 2009-11-19

Release Date 2010-10-06

Last Version Date 2024-02-21

Entry Detail

PDB ID:

3KRY

Keywords:

HYDROLASE

Title:

Crystal structure of MMP-13 in complex with SC-78080

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.90 Å

R-Value Free:

0.25

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Collagenase 3
Gene (Uniprot):MMP13
Chain IDs:A, B, C, D
Chain Length:164
Number of Molecules:4
Biological Source:Homo sapiens

UniProt ID:P45452 Pfam ID:PF00413 EC:3.4.24.17

Ligand Molecules

3KR

Primary Citation

Orally-active MMP-1 sparing alpha-tetrahydropyranyl and alpha-piperidinyl sulfone matrix metalloproteinase (MMP) inhibitors with efficacy in cancer, arthritis, and cardiovascular disease

Becker, D.P, Barta, T.E, Bedell, L.J, Boehm, T.L, Bond, B.R, Carroll, J, Carron, C.P, Decrescenzo, G.A, Easton, A.M, Freskos, J.N, Funckes-Shippy, C.L, Heron, M, Hockerman, S, Howard, C.P, Kiefer, J.R, Li, M.H, Mathis, K.J, McDonald, J.J, Mehta, P.P, Munie, G.E, Sunyer, T, Swearingen, C.A, Villamil, C.I, Welsch, D, Williams, J.M, Yu, Y, Yao, J.Show

J.Med.Chem. 53 6653 6680 (2010)

PMID: 20726512 DOI: 10.1021/jm100669j

Abstact

α-Sulfone-α-piperidine and α-tetrahydropyranyl hydroxamates were explored that are potent inhibitors of MMP's-2, -9, and -13 that spare MMP-1, with oral efficacy in inhibiting tumor growth in mice and left-ventricular hypertrophy in rats and in the bovine cartilage degradation ex vivo explant system. α-Piperidine 19v (SC-78080/SD-2590) was selected for development toward the initial indication of cancer, while α-piperidine and α-tetrahydropyranyl hydroxamates 19w (SC-77964) and 9i (SC-77774), respectively, were identified as backup compounds.

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Primary Citation of related structures