3KNX image
Entry Detail
PDB ID:
3KNX
Keywords:
Title:
HCV NS3 protease domain with P1-P3 macrocyclic ketoamide inhibitor
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2009-11-12
Release Date:
2010-10-27
Method Details:
Experimental Method:
Resolution:
2.65 Å
R-Value Free:
0.26
R-Value Work:
0.16
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:HCV NS3 Protease
Chain IDs:A, C
Chain Length:200
Number of Molecules:2
Biological Source:Hepatitis C virus subtype 1a
Polymer Type:polypeptide(L)
Description:HCV NS4a peptide
Mutations:C28S
Chain IDs:B, D
Chain Length:23
Number of Molecules:2
Biological Source:
Primary Citation
Discovery and structure-activity relationship of P1-P3 ketoamide derived macrocyclic inhibitors of hepatitis C virus NS3 protease.
J.Med.Chem. 52 336 346 (2009)
PMID: 19102654 DOI: 10.1021/jm800940u

Abstact

Hepatitis C virus (HCV) infection is the major cause of chronic liver disease, leading to cirrhosis and hepatocellular carcinoma, and affects more than 200 million people worldwide. Although combination therapy of interferon-alpha and ribavirin is reasonably successful in treating majority of genotypes, its efficacy against the predominant genotype (genotype 1) is moderate at best, with only about 40% of the patients showing sustained virological response. Herein, the SAR leading to the discovery of a series of ketoamide derived P(1)-P(3) macrocyclic inhibitors that are more potent than the first generation clinical candidate, boceprevir (1, Sch 503034), is discussed. The optimization of these macrocyclic inhibitors identified a P(3) imide capped analogue 52 that was 20 times more potent than 1 and demonstrated good oral pharmacokinetics in rats. X-ray structure of 52 bound to NS3 protease and biological data are also discussed.

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