3KLT image
Deposition Date 2009-11-09
Release Date 2010-05-26
Last Version Date 2024-03-20
Entry Detail
PDB ID:
3KLT
Title:
Crystal structure of a vimentin fragment
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.33
R-Value Work:
0.29
R-Value Observed:
0.29
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Vimentin
Gene (Uniprot):VIM
Chain IDs:A, B, C, D
Chain Length:72
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Atomic structure of vimentin coil 2.
J.Struct.Biol. 170 369 376 (2010)
PMID: 20176112 DOI: 10.1016/j.jsb.2010.02.012

Abstact

Intermediate filaments (IFs) are essential cytoskeletal components in metazoan cells. They assemble from elementary dimers that are built around the central alpha-helical coiled-coil rod domain representing the IF 'signature'. The rod consists of two similarly-sized parts, coil 1 and coil 2, connected by a non-alpha-helical linker L12. Coil 2 is absolutely conserved in length across all IF types and was initially predicted to consist of a short coiled-coil segment 2A based on a heptad pattern of hydrophobic residues, another linker L2 and a coiled-coil segment 2B. Here we present the crystal structure of human vimentin fragment including residues 261-335 i.e. approximately the first half of coil 2. The N-terminal part of this fragment reveals a parallel alpha-helical bundle characterized by 3.5 consecutive hendecad repeats. It is immediately followed by a regular left-handed coiled coil. The distinct non-helical linker L2 is therefore not observed. Together with the previously determined crystal structure of the major part of segment 2B (Strelkov et al., 2002), we can now build a complete atomic model of the 21nm long vimentin coil 2 dimer being a relatively rigid rod.

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